MeaNS - Measles Nucleotide Surveillance

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Detailed Statistics of MeaNS database - as of 17 August 2018

Database field

Number of distinct entries

Distinct entry and number of samples

Isolation source

167

11 year old male = 1
18 year old male = 1
30 year old male = 2
31 year old female = 1
42 year old male = 1
B95a = 1
blood = 32
Blood = 83
Blood from patient with measles arriving from Pakistan 4 days ago = 1
Blood specimens from measles patients = 2
Brain biopsy = 11
Bronchio-alveolar lavage = 4
case at INMI L. SPallanzani the 12th week of 2014 (between March 10-16) = 1
case at INMI L. Spallanzani the 13th week of 2014 (between March 17-23) = 1
cell culture infected by clinical sample = 6
cell culture infected by throat swab = 4
cell culture infected by urine = 4
cell lysate = 478
cerebrospinal fluid = 8
clinical sample = 51
clinical specimen = 214
clinical throat swab = 1
clinic sample = 1
Combined nose and throat swab = 4
conjunctival scraping = 1
Csf = 2
cultured in lab from urine sample = 2
direct sequencing = 1
dna = 1
Edta whole blood = 10
es = 1
ETTA = 1
eye secretion = 1
female = 14
host eye conjunctiva = 1
host saliva = 20
host throat swab = 3
host urine = 4
human blood = 3
Human blood = 23
human brain = 1
human nasopharyngeal specimen = 2
human throat swab = 3
Human throat swab = 4
Human urine = 3
kidney = 3
l6 = 3
male = 14
male (34 years old) = 1
Measeles/rubella (other) = 6
Measles = 2
Measles (other) = 496
MIBE Patient1 = 1
MIBE Patient2 = 1
MIBE Patient3 = 1
Mouth swab = 316
na = 3
Nasal and/or Throat Swab = 12
nasal pharyngeal aspirate = 1
Nasal swab = 5
Nasal Swab = 4
nasopharingeal sample = 1
Nasopharyngeal = 2
nasopharyngeal aspirate = 37
Naso pharyngeal aspirate = 738
nasopharyngeal aspirate (NPA) = 1
nasopharyngeal sample = 1
nasopharyngeal swab = 25
nose swab = 45
Nose swab = 835
nts = 19
NULL = 281
+oral fluid = 1
oral fluid = 77
Oral fluid = 4842
oral fluid; urine = 1
oral swab = 38
Oral Swab = 6
oral swab specimen of patient suspected to have measles infection = 1
oro-pharyngeal swab = 1
oropharyngeal swab from vaccine-associated measles in 18-month-old male child receiving his first dose of MMRV vaccine = 1
other specimen = 2
Other specimen = 386
patient believed to have been infected in Mauritius = 1
patient HS14006 = 1
patient HS14008 = 1
patient serum = 16
patient throat swab = 5
patient with acute measles = 4
PBMC = 3
PBMC, thoroat swab = 1
peripheral blood lymphocytes = 3
peripheral blood mononuclear cell = 1
peripheral blood mononuclear cell of patient = 1
peripheral blood mononuclear cell (PBMC) = 1
peripheral blood mononuclear cells = 36
Peripheral blood mononuclear cells = 4
pharyngeal exudate = 9
pharyngeal swab = 1
Pharyngeal swab = 1
Pharynx-swab from measles patient = 5
pharynx-swab specimens from measles patients = 1
Pharynx-swab specimens from measles patients = 22
plasma = 1
Plasma = 35
respiratory sample from a child with ARI = 1
rna = 5
saliva sample = 11
sera = 4
serum = 24
Serum = 635
serum from male = 1
Serum/plasma = 147
sp = 2
SSPE = 1
SSPE patient brain tissue = 1
stool = 2
sw = 119
Swab = 3
throat = 4
throat seab = 1
throat swab = 777
Throat swab = 5764
Throat Swab = 5
throat swab and urine = 1
throat Swab and urine = 2
throat swab, blood = 1
throat swab, blood for Homo sapiens 7 month-old-baby = 1
throat swab from 17 year old male = 1
throat swab from female = 3
throat swab from male = 1
throat swab of a 6 year old = 1
throat swab of a female patient = 1
throat swab of a male patient = 1
throat swab sample = 1
Throat swab/Serum = 2
throat swab specimen of patient suspected to have measles infection = 8
Throat swabs speciments from measles patients = 1
throat swab & urine = 1
throat swab, urine = 8
Throat wash = 88
Tissue = 2
tissue culture fluid = 2
Tissue culture fluid = 630
urine = 466
Urine = 4566
urine from female = 1
Urine or Throat swab = 4
urine, pharynx swab from male (10 years old) = 1
urine, pharynx swab from male (17 years old) = 1
urine, pharynx swab, whole blood from female (26 years old) = 1
urine, pharynx swab, whole blood from female (43 years old) = 1
urine, pharynx swab, whole blood from female (50 years old) = 1
urine, pharynx swab, whole blood from male (17 years old) = 1
urine, pharynx swab, whole blood from male (33 years old) = 1
urine, pharynx swab, whole blood from male (35 years old) = 1
urine, pharynx swab, whole blood from male (38 years old) = 1
urine, pharynx swab, whole blood from male (43 years old) = 1
urine, pharynx swab, whole blood from male (44 years old) = 1
Vero cell culture = 3
Vero/hSLAM cell culture infected by throat swab = 3
Vero/hSLAM cell culture infected by urine = 3
Vero/hSLAM cell culture infected with clinical sample = 1
Vero/hSLAM cell culture infected with urine = 5
viral isolate = 1
Whole blood = 1
whole cell/tissue lysate = 80

Recent travel

218

0 = 17
Afghanistan = 30
Albania = 1
Algeria = 1
Angola = 3
Asia = 5
Asia of North-East = 1
Asie = 2
Australia = 10
Australia, Indonesia, Thayland = 1
Austria = 3
Austria, Bosnia and Herzegovina = 1
Azerbaijan = 16
Bali, Thailand = 1
Bangladesh = 10
Barbados = 1
Belarus = 2
BELARUS = 1
Belgium = 8
Belgium, France = 1
Bonaire = 1
Bosnia and Herzegovina = 11
BOSNIA AND HERZEGOVINA = 1
BOSNIA AND HERZEGOVINA, 0 = 4
Bosnia and Herzegovina, Germany = 1
Brazil = 5
Bulgaria = 2
Burundi = 1
Cambodia, Indonesia, Vietnam = 1
Cameroon = 2
Canada = 39
CHE = 1
Chile = 1
China = 65
CHINA = 4
China, HongKong = 1
China, Singapore = 1
Contacted history from England case = 2
Costa pacifica cruise = 1
Croatia = 4
CROATIA = 1
cruise - costa pacifica = 1
Cuba = 3
Cyprus = 1
CYPRUS = 1
Czech republic = 1
Denmark = 2
Denmark, Germany, Czech Republic, Austria, Croatia, Slovenia, Italy = 1
Djibouti = 3
Egypt = 5
Egypt, Ukraine = 1
Epi-link in aircraft = 1
Epi-link on aircraft to patient from Philippines = 1
Equatorial guinea = 1
Equatorial Guinea = 1
Eritrea = 1
Ethiopia = 21
Europe = 1
European cruise = 1
Finland = 1
France = 83
FRANCE = 2
France, Netherlands = 1
France, Spain = 1
Georgia = 19
Germany = 48
GERMANY = 1
Greece = 5
Guatemala = 1
Guinea = 1
Holland = 1
Hong Kong, Thailand = 3
Hungary, Romania, Germany = 1
Ibiza = 1
IDN = 3
IDN, SGP = 1
India = 156
INDIA = 1
India,Ukraine = 1
Indonesia = 122
INDONESIA = 7
Indonesia, Malaysia = 1
INDONESIA, SINGAPORE = 1
Iraq = 3
Ireland = 5
Israel = 4
Italia, Alemania = 1
Italy = 45
ITALY = 1
Italy, Montenegro = 1
Italy & Netherlands = 1
Japan = 10
Jordan = 1
Jordan, Saudi Arabia = 1
Kazakhstan = 25
Kenya = 9
KOR = 2
Korea = 1
Korea, Japan = 1
Kosovo = 2
Kyrgyzstan = 20
Latvia = 3
Lebanon = 2
Links to roma pop = 1
Lithuania = 2
MACEDONIA, THE FORMER YUGOSLAV REPUBLIC OF = 1
Malaysia = 23
Malaysia, Indonesia = 1
Mexico = 4
Micronesia = 6
Micronesia (Federated States of ) = 16
Middle East = 1
Mongolia = 9
MONGOLIA = 1
Montenegro = 1
Morocco = 4
Multiple countries = 5
Myanmar = 3
Nelson, Christchurch and Wellington NZL = 1
Nelson, Christchurch, Hokitika, Haast NZL = 1
Nepal = 4
Netherlands = 11
NETHERLANDS = 1
New Zealand = 3
Niger = 1
Nigeria = 2
Nil = 1
No = 4
NO = 12
No recent travel to other countries = 1
No recent travel to other countries = 8
No recent travel to other countries = 1
Norway = 3
Not known = 2112
NULL = 276
OMAN = 1
Pakistan = 66
Pakistan/afghanistan = 1
Palestine = 1
Papua New Guinea = 10
Philippines = 156
PHILIPPINES = 1
Poland = 9
POLAND = 1
Portugal = 1
Qatar = 7
Queenstown and Wanaka NZL = 1
Queenstown NZL = 1
Republic of Korea = 3
Roma = 1
Romania = 59
ROMANIA = 5
Romania, Hungary = 1
Russia = 1
Russian Federation = 18
RUSSIAN FEDERATION = 3
Rwanda = 1
Saipan = 1
Saudi arabia = 2
Saudi Arabia = 10
Serbia = 6
SGP = 1
Singapore = 10
Singapore, Hong Kong = 2
Slovakia = 1
Somalia = 18
South Africa = 5
SOUTH AFRICA = 2
South Africa, Zimbabwe, Namibia, Botswana = 1
Spain = 25
SPAIN = 1
Sri lanka = 3
Sri Lanka = 8
SRI LANKA = 1
Sudan = 1
Sweden = 1
Switzerland = 11
SWITZERLAND, 0 = 1
SWITZERLAND, Patient used airports in Zurich and Hamburg = 1
Switzerland, Thailand, Philippines, Turkey = 1
Syrian Arab Republic = 4
Tajikistan = 2
Thailand = 102
THAILAND = 1
Thailand, Cambodia, United Kingdom = 1
Thailand, Malaysia = 1
Thailand, Myanmar = 1
Thailand, Namibia = 1
Thailand, South Korea = 1
Thailand/Viet Nam = 1
Trinidad and Tobago = 1
Tunisia = 2
Turkey = 22
Turkmenistan = 1
Uganda = 8
UK = 6
Ukraine = 38
Ukraine, Poland = 2
UK, Spain = 1
United arab emirate = 1
United arab emirates = 1
United Arab Emirates = 12
United Kingdom = 63
UNITED KINGDOM = 2
United Kingdom, France & Netherlands = 1
United Kingdom, Philippines = 1
United Republic of Tanzania = 3
United States of America = 15
United States of America, Netherlands = 1
unknown = 2
Uzbekistan = 17
Vanuatu = 2
Venezuela = 17
Vietnam = 3
Viet Nam = 23
Worker of Aırport (international) = 1
Yemen = 5
Zambia = 1

Epi Link

240

(?) = 1
106093 = 1
106144 = 1
108134 = 1
109073 = 1
112913 = 1
112916 = 2
114350 = 2
14-242030-AK = 1
14-242727-AK = 1
14-242733-AK = 1
15-263352-PN = 1
16-106153-HN = 1
16-280393-HN = 14
16-281965-HN = 1
16-282109-PN = 2
16-283210-HN = 1
16-283795-HN = 1
16-285608-WN = 2
17-299904-AK = 1
18-320668-CH = 3
18-322558-AK = 2
18-326811-IN = 1
424917 = 1
68883 = 2
91041 = 1
Afghanis who are imported cases = 4
Afghanis who are imported cases = 12
Africa = 1
Alicante () = 1
Amsterdam Airport (Schiphol) = 1
and Malaysia = 1
and United Kingdom = 1
(Bali) = 1
Bali Traveller = 1
(Bangkok) = 1
Bangladesh = 1
Basketball tournament in Barcelona. = 1
Brother of 528/17 (MVs/Ljubljana.SVN/3.17/) = 1
brother of Lux17-H-3 = 1
brother was 2 weeks prior in Romania, where he got infected with measles = 1
Brother with local sample ID 2016-2043 = 1
Burkina faso = 1
Burma = 1
case imported to Luxembourg, first symptoms already in the Philippines = 1
case was imported to Luxembourg, symptoms upon return from Thailand = 1
Case with sample ID 46450 = 1
Case with sample ID 46452 = 1
China = 3
Contact of a confirmed measles case with MeaNS Sample ID 46449 = 1
Contact of confirmed case from BIH = 2
Contact of MeaNS ID 50473 = 1
Contact of MV confirmed traveler from Bosnia and Herzegovina = 1
Contact to sample ID 2016-2043 = 1
contact with case from India = 1
Contact with person who visited Belgium & France = 2
Contact with relative = 1
contact with suspect case = 1
Contact with visiting n cousin = 2
Crevillente (Alicante) = 1
Croatia = 1
Dog exhibition in Zagreb = 2
East Timor = 1
Endemic circulation in S = 1
Epi-link on aircraft to patient from Philippines = 1
Epi link to case with travel history to = 1
Epi link to france = 5
Epi link to italy = 1
epi link to MeaNS sample ID 14572 (local sample id VE11-1373) = 1
Family doctor of 528/17, (MVs/Ljubljana.SVN/3.17/) = 1
Festival in Glastonbury, U.K. = 1
Florida, USA = 3
France = 1
germany, Ukrain, = 1
(Guam) = 1
Hawaii, USA = 1
HCW = 1
His son "sample id (local)487831" who got measles in Indonesia = 1
Holland = 1
hospital = 2
ia = 1
Importation from Indonesia = 1
Importation from Mecca, Saudi Arabia = 1
Importation from Romania = 1
Importation from Viet Nam = 1
Imported = 3
Imported from China = 4
Import - related case () = 1
Import-related case () = 1
Import - related case (Kyrgyzstan) = 2
Import related (Linked to case imported from Ukraine) = 1
index case travelled to Philippiines = 1
Index case travelled to the Philippines = 1
India, Goa, Baga city = 1
India, import-related = 2
Indian = 1
International dog exhibition CACIB šempeter & Vrtojba = 11
International dog exhibition CACIB Šempeter Vrtojba = 2
International dog exhibition CACIB Šempeter & Vrtojba = 7
Iran = 1
Irish tourist; traveled to Italy and before. = 1
(Java) = 1
Kazakhstan (import related case) = 1
Kindergarten Moravče = 4
Kosovo = 1
Laboratory confirmed case within orthodox protestant family = 1
Linced to case imported from Spain = 1
linked to a lab confirmed case in Uganda = 1
Linked to case imported from = 1
Linked to case, imported from = 8
Linked to case imported from Kazakhstan = 1
Linked to case imported from Spain = 1
Linked to case imported from Sri Lanka = 2
Linked to case imported from Thailand = 1
Linked to imported case from Ukraine = 2
Local case, source is unknown = 2
Local outbreak, index cases imported from = 1
Madrid () = 1
, Malaysia = 1
Marbella (Malaga, ) = 1
Means 30146 = 1
MeaNS ID 49258 = 1
Means ID 51680 = 1
MeaNS sample id 129246 = 1
MEANS (seq) 110475 = 1
MEANS seq-ID 50742 = 1
MMR122517276 = 1
Motor rally from Russia to Europe and Iceland = 1
Multiple = 1
Murcia () = 1
MVs/Alberta.CAN/19.18 (MMR18-1002) = 1
MVs/Amsterdam.NLD/15.11/1 = 1
MVs/Amsterdam.NLD/27.11/1 = 3
MVs/British Columbia.CAN/23.13 = 1
MVs/British Columbia.CAN/23.13/ = 1
MVs/British Columbia.CAN/35.13/2; MeaNS 40430 = 1
MVs/BritishColumbia.CAN/4.13 = 1
MVs/Dublin.IRL/23.13/[D8] = 1
MVs/Lisboa.PRT/14.17/5 = 1
MVs/Lisbon.PRT/13.17/ = 4
MVs/Maribor.SVN/21.18[B3] (MeaNS ID: 128993) = 4
MVs/NewBrunswick.CAN/7.13 = 2
MVs/Ontario.CAN/08.14/ = 1
MVs/Ontario.CAN/22.13 = 1
MVs/Ontario.CAN/24.13 = 1
MVs/Ontario.CAN/34.17/ = 1
MVs/Ontario.CAN/9.13 = 4
MVs/Torres Vedras.PRT/12.18 = 2
NA = 1
No = 3
NO = 1
None = 1
No other = 2
No recent travel = 1
not known = 1
Not known = 243
Not Known = 4
No travel = 25
No Travel Histry = 1
one-year old child = 1
on-year old child = 1
Orthodox protestant community = 1
Outbreak = 36
Outbreak in Bavaria = 11
Outbreak in Berlin = 7
Outbreak in Berlin-Brandenburg Region = 28
Outbreak in Lower Bavaria = 2
Outbreak in Munich = 2
Outbreak in Saxony-Anhalt = 1
Outbreak in Schleswig-Holstein = 4
Outbreak in Schwyz = 7
Outbreak in Thuringia = 4
Outbreak in Wroclaw, Poland, 2012 = 3
Outbreaks in Bosnia and Herzegoina = 1
Outbreak Upper Bavaria = 4
Patient believed to have been infected from visitors from Poland the week prior. = 1
Patient is a sibling of MeaNS ID 49284 = 1
patient travelled from Australia via Bangkok and Frankfurt to Luxembourg 28.2.-1.3. = 1
Patient visited the same family doctor in very short time after 528/17, (MVs/Ljubljana.SVN/3.17/) = 2
pediatric medical center = 4
Person born 1964, works at Amsterdam Airport (Schiphol) = 1
person born 1972; epidemiological contact of MEANS sample ID 30146 = 1
person born 1974, epi-link to MEANS sample-ID 46798/46799 = 1
person born 1981; epidemiological contact of MEANS sample ID 30146 = 1
person born 1981; epidemiologically linked to MEANS ID 30146 = 1
person born 1983; stayed in London during measles incubation period = 1
Person born 1985, works at Amsterdam Airport (Schiphol) = 1
person born 2010 = 1
person born 2011, not vaccinated (yet), epidemiological contact of MEANS sample ID 30146 = 1
person born 2012, not vaccinated (yet); epidemiological contact of MEANS ID 30146 = 1
Person working at Amsterdam Airport, born 1958 = 1
Portugal and = 1
Possible epi link to germany = 1
Primary case was a child that had visited western Romania (child infected there) before return to Ireland. Patient and a child had both been on the same aircraft on 23.5.2016. = 1
Recent travel: Kosovo = 1
recreation center and family = 1
Related to case with sample ID 46451 = 1
Republic of Abkhazia = 1
Rock festival in The Netherlands = 1
Romania = 5
Sample ID 23400. = 1
Sample ID 23402. = 1
Sample ID: 68917 = 1
SAR15/18/0007 = 1
SAR15/18/0012 = 1
SAR15/18/0019 = 1
SAR15/18/0022 = 1
SAR15/18/0023 = 1
SAR2013/07/04 = 1
SAR2016/07/0004_201635478 = 1
SAREF 2013/07/02 = 1
, saudi arabia = 1
school = 10
Sibling had travelled to Bali, Indonesia = 1
Sister of 528/17, (MVs/Ljubljana.SVN/3.17/) = 1
Somalia = 1
son of MVs/Yunnan.CHN/13.17/ who traveled to Thailand. = 1
South africa = 4
Spain = 1
Spain-Italy-Austria = 1
Sri lanka = 1
Steiner school - index case = 1
Suspected to have acquired in Galway, Ireland = 1
Sweden, , Kosovo = 1
Tanzania = 1
The 2011 Quebec outbreak dataset was updated and reviewed. Some WHO names were changed. The correct name for this sample is MVs/Saskatchewan.CAN/13.11/1 (the onset date is 2011-04-02). = 1
The Former Yugoslav Republic of Macedonia = 1
This patient was 13 months old (i.e. before first MMR), mother had travelled to Italy and developed measles (rash onset 05 Feb 2013) = 1
tourist from Hong Kong = 1
Travel to Philippines then Bangkok, Thailand = 1
, UK = 1
United arab emirates = 2
Usa = 1
Valencia () = 1
Visiting tourist = 1
yes = 2
Yes = 5
YES = 1
Yes (contact with related from Kosovo) = 1
yes to MVs/Maribor.SVN/19.18[B3] = 1

Isolate available

No = 1619
Not known = 200
Yes = 779

Sequenced gene

F = 11
H = 975
L = 11
M = 11
MF_NCR_1018n_with_start_and_stop = 1
N = 14
N_450 = 42453
P = 103
WGS = 11